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The Resource The science and applications of microbial genomics : workshop summary, Eileen R. Choffnes, LeighAnne Olsen, and Theresa Wizemann, rapporteurs ; Forum on Microbial Threats, Board on Global Health, Institute of Medicine of the National Academies

The science and applications of microbial genomics : workshop summary, Eileen R. Choffnes, LeighAnne Olsen, and Theresa Wizemann, rapporteurs ; Forum on Microbial Threats, Board on Global Health, Institute of Medicine of the National Academies

Creator
Author
Contributor
Summary
On June 12 and 13, 2012, the Institute of Medicine's (IOM's) Forum on Microbial Threats convened a public workshop in Washington, DC, to discuss the scientific tools and approaches being used for detecting and characterizing microbial species, and the roles of microbial genomics and metagenomics to better understand the culturable and unculturable microbial world around us. Through invited presentations and discussions, participants examined the use of microbial genomics to explore the diversity, evolution, and adaptation of microorganisms in a wide variety of environments; the molecular mechanisms of disease emergence and epidemiology; and the ways that genomic technologies are being applied to disease outbreak trace back and microbial surveillance. Points that were emphasized by many participants included the need to develop robust standardized sampling protocols, the importance of having the appropriate metadata (e.g., the sequencing platform used, sampling information, culture conditions), data analysis and data management challenges, and information sharing in real time
Language
eng
Work
Publication
Extent
1 online resource (1 PDF file (xxiv, 403 pages))
Note
Title from PDF title page
Contents
  • Workshop overview
  • Contributed manuscripts
  • The microbial forensics pathway for use of massively parallel sequencing technologies
  • Microbial virulence as an emergent property: consequences and opportunities
  • Microbial genome sequencing to understand pathogen transmission
  • Presence of oseltamivir-resistant pandemic A/H1N1 minor variants before drug therapy with subsequent selection and transmission
  • Design considerations for home and hospital microbiome studies
  • Sequencing errors, diversity estimates, and the rare biosphere
  • Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar
  • Big data in biology: pitfalls when using shotgun metagenomics to define hypotheses about microbial communities
  • High-throughput bacterial genome sequencing: embarrassment of choice, a world of opportunity
  • Evidence for several waves of global transmission in the seventh cholera pandemic
  • Multi-partner interactions in corals in the face of climate
  • Change genomic transition to pathogenicity in chytrid fungi
  • Natural and experimental infection of Caenorhabditis nematodes by novel viruses related to nodaviruses
  • Genomic approaches to studying the human microbiota
  • Sequence analysis of the human virome in febrile and afebrile children
Isbn
9780309268202
Instance
Label
The science and applications of microbial genomics : workshop summary
Title
The science and applications of microbial genomics
Title remainder
workshop summary
Statement of responsibility
Eileen R. Choffnes, LeighAnne Olsen, and Theresa Wizemann, rapporteurs ; Forum on Microbial Threats, Board on Global Health, Institute of Medicine of the National Academies
Creator
Contributor
Author
Sponsoring body
Subject
Genre
Language
eng
Summary
On June 12 and 13, 2012, the Institute of Medicine's (IOM's) Forum on Microbial Threats convened a public workshop in Washington, DC, to discuss the scientific tools and approaches being used for detecting and characterizing microbial species, and the roles of microbial genomics and metagenomics to better understand the culturable and unculturable microbial world around us. Through invited presentations and discussions, participants examined the use of microbial genomics to explore the diversity, evolution, and adaptation of microorganisms in a wide variety of environments; the molecular mechanisms of disease emergence and epidemiology; and the ways that genomic technologies are being applied to disease outbreak trace back and microbial surveillance. Points that were emphasized by many participants included the need to develop robust standardized sampling protocols, the importance of having the appropriate metadata (e.g., the sequencing platform used, sampling information, culture conditions), data analysis and data management challenges, and information sharing in real time
Cataloging source
NLM
http://library.link/vocab/creatorName
Choffnes, Eileen R
Dewey number
572.8/629
Funding information
Financial support for this project was provided by the U.S. Department of Health and Human Services: National Institutes of Health, National Institute of Allergy and Infectious Diseases, Centers for Disease Control and Prevention, and the Food and Drug Administration; U.S. Department of Defense, Department of the Army: Global Emerging Infections Surveillance and Response System, Medical Research and Materiel Command, and the Defense Threat Reduction Agency; U.S. Department of Veterans Affairs; U.S. Department of Homeland Security; U.S. Agency for International Development; Uniformed Services University of the Health Sciences; the Alfred P. Sloan Foundation, American Society for Microbiology; sanofi pasteur; Burroughs Wellcome Fund; GlaxoSmithKline; Infectious Diseases Society of America; and the Merck Company Foundation.
Illustrations
illustrations
Index
no index present
LC call number
QH447
Literary form
non fiction
Nature of contents
  • dictionaries
  • bibliography
  • technical reports
NLM call number
QW 51
http://library.link/vocab/relatedWorkOrContributorDate
2012
http://library.link/vocab/relatedWorkOrContributorName
  • Olsen, LeighAnne
  • Wizemann, Theresa M.
  • Institute of Medicine (U.S.)
  • Workshop on the Science and Applications of Microbial Genomics
http://library.link/vocab/subjectName
  • Metagenomics
  • Microbial genomics
  • Communicable diseases
  • Genetics, Microbial
  • Genome, Microbial
  • Metagenomics
  • Microbiological Phenomena
  • SCIENCE
  • Communicable diseases
  • Metagenomics
  • Microbial genomics
Label
The science and applications of microbial genomics : workshop summary, Eileen R. Choffnes, LeighAnne Olsen, and Theresa Wizemann, rapporteurs ; Forum on Microbial Threats, Board on Global Health, Institute of Medicine of the National Academies
Instantiates
Publication
Note
Title from PDF title page
Bibliography note
Includes bibliographical references
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
Workshop overview -- Contributed manuscripts -- The microbial forensics pathway for use of massively parallel sequencing technologies -- Microbial virulence as an emergent property: consequences and opportunities -- Microbial genome sequencing to understand pathogen transmission -- Presence of oseltamivir-resistant pandemic A/H1N1 minor variants before drug therapy with subsequent selection and transmission -- Design considerations for home and hospital microbiome studies -- Sequencing errors, diversity estimates, and the rare biosphere -- Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar -- Big data in biology: pitfalls when using shotgun metagenomics to define hypotheses about microbial communities -- High-throughput bacterial genome sequencing: embarrassment of choice, a world of opportunity -- Evidence for several waves of global transmission in the seventh cholera pandemic -- Multi-partner interactions in corals in the face of climate -- Change genomic transition to pathogenicity in chytrid fungi -- Natural and experimental infection of Caenorhabditis nematodes by novel viruses related to nodaviruses -- Genomic approaches to studying the human microbiota -- Sequence analysis of the human virome in febrile and afebrile children
Control code
837646089
Dimensions
unknown
Extent
1 online resource (1 PDF file (xxiv, 403 pages))
Form of item
online
Isbn
9780309268202
Lccn
2013444207
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Other physical details
illustrations
Specific material designation
remote
System control number
(OCoLC)837646089
Label
The science and applications of microbial genomics : workshop summary, Eileen R. Choffnes, LeighAnne Olsen, and Theresa Wizemann, rapporteurs ; Forum on Microbial Threats, Board on Global Health, Institute of Medicine of the National Academies
Publication
Note
Title from PDF title page
Bibliography note
Includes bibliographical references
Carrier category
online resource
Carrier category code
  • cr
Carrier MARC source
rdacarrier
Content category
text
Content type code
  • txt
Content type MARC source
rdacontent
Contents
Workshop overview -- Contributed manuscripts -- The microbial forensics pathway for use of massively parallel sequencing technologies -- Microbial virulence as an emergent property: consequences and opportunities -- Microbial genome sequencing to understand pathogen transmission -- Presence of oseltamivir-resistant pandemic A/H1N1 minor variants before drug therapy with subsequent selection and transmission -- Design considerations for home and hospital microbiome studies -- Sequencing errors, diversity estimates, and the rare biosphere -- Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar -- Big data in biology: pitfalls when using shotgun metagenomics to define hypotheses about microbial communities -- High-throughput bacterial genome sequencing: embarrassment of choice, a world of opportunity -- Evidence for several waves of global transmission in the seventh cholera pandemic -- Multi-partner interactions in corals in the face of climate -- Change genomic transition to pathogenicity in chytrid fungi -- Natural and experimental infection of Caenorhabditis nematodes by novel viruses related to nodaviruses -- Genomic approaches to studying the human microbiota -- Sequence analysis of the human virome in febrile and afebrile children
Control code
837646089
Dimensions
unknown
Extent
1 online resource (1 PDF file (xxiv, 403 pages))
Form of item
online
Isbn
9780309268202
Lccn
2013444207
Media category
computer
Media MARC source
rdamedia
Media type code
  • c
Other physical details
illustrations
Specific material designation
remote
System control number
(OCoLC)837646089

Subject

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